Meanwhile just about ever graph manipulation program (e.g. It produces pretty ugly graphs that can't be exported to any other format. I had wanted to write a Mermaid-to-Graphviz compiler but never got around to it. It can be useful to analyze larger scale Nengo networks as it gives some more flexibility. I wanted to like Mermaid, then I realized it was just a neutered version of GraphViz. Speaking of R, you may find interesting the following blog posts: on using R with Cytoscape ( ) and on using R with Gephi ( ).įor extensive lists of network analysis and visualization software, including some comparison and reviews, you might want to check the following pages: 1) 2) 3). Gephi is an open-source graph visualization and exploration program. Graph visualization is a way of representing structural information as diagrams of abstract graphs and. Gephi visualization of a network consisting of 202,424 nodes and 354,468. If you'd like to work with networks programmatically (including visualization) in R, Python or C/C++, you can check igraph collection of libraries. Graphviz is open source graph visualization software. Gephi can load networks in GEXF, GDF, GML, GraphML, Pajek (NET), GraphViz (DOT). Cytoscape ( ) is an alternative to Gephi, being an another popular platform for complex network analysis and visualization. Furthermore, the network graph is analyzed by graph visualization and manipulation tools such as Gephi, UCINET, Graphviz, and NodeXL. Some additional information on using Gephi with large networks can be found here and, more generally, here. I also suggest Gephi software ( ), which seems to be quite powerful.
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